Visualizations

Edge-level Results

Edge-level Results are visualized in color as correlation coefficients and nominally thresholded and binarized p-values in black and white.

Network-level Results

Net-level results are visualized in a lower triangle matrix. (See Lower Triangle Network-Level Results Window). Significant network pairs are marked with a black X.

Edge-level Chord Plots

Edge-level chord plots show all edge-level results for significant network pairs after analysis. (See Lower Triangle Network-Level Results Window for all plotting options).

_images/edge_chord_pval.png — Type: p-value

_images/edge_chord_coeff.png — Type: coefficient

_images/edge_chord_coeff_split.png — Type: coefficient, split

_images/edge_chord_coeff_basic.png — Type: coefficient, basic

_images/edge_chord_coeff_split_basic.png — Type: coefficient, split + basic

Net-level Chord Plots

Net-level chord plots show all net-level results for significant network pairs after analysis.

Network Pair Size Diagnostic Plots

Network pair size dianostic plots detail the effects of network pair size on results. The leftmost plot has non-permuted p-values on the x axis and permutation-based p-vaues on the y axis. The middle plot shows non-permuted p-values for all network pairs against network pair size, and the rightmost plot shows permuted p-values for all network pairs against network pair size.

_images/net_pair_size_diagnostic_plot.png