Welcome to documentation for Network Level Analysis

Table of Contents:

• Preface
  • Hardware and Software Requirements
• Methodology
  • The Network Level Analysis (NLA) Method
  • Brain Network Map Selection
  • Connectivity Matrices
  • Edge-level Statistical Model Selection
  • Network-level Statistical Model Selection
  • How Should the Test Statistic Threshold Be Chosen?
  • How Should the Networks Be Chosen?
• Setup
  • Download
  • Add NLA Folders to MATLAB Path
• Getting Started
  • Running with example data
  • Running with example pre-calculated data
• Using the GUI
  • Main Window
  • Results Window
  • Lower Triangle Network-Level Results Window
• Behavior Table
  • Behavior File
• Network Atlases
  • Overview
  • Provided Network Atlases
• Quality Control
  • Quality Plots on Main NLA_GUI
  • Quality Control GUI
• Edge-level Statistical Tests
  • Methods
  • Common Inputs
  • Provided Tests
• Network-level Statistical Tests
  • Methods
  • Common Inputs
  • Provided Tests
  • Creating additional network-level tests
• Network-level Results
  • Overview
  • Calculating p-value
  • Result Rank
• Visualizations
  • Edge-level Results
  • Network-level Results
  • Edge-level Chord Plots
  • Net-level Chord Plots
  • Network Pair Size Diagnostic Plots
• Sandwich Estimator
  • General
  • Opening Main Settings
  • SWE Settings Window
• For Developers
  • Creating additional edge-level tests
  • Creating additional network-level tests
• References

Indices and tables

• Index

• Module Index

• Search Page